capellini.utils.taxonomy
========================

.. automodule:: capellini.utils.taxonomy

   
   .. rubric:: Functions

   .. autosummary::
   
      apply_custom_renames
      assign_ncbi_taxids
      build_name_to_ncbi
      build_rank_to_taxids
      clean_bacteria_taxonomy
      clean_df_ids
      clean_index_ids
      load_bacteria_taxonomy
      lookup_ncbi_taxid
      parse_bool_series
      rename_clostridium_sensu_stricto
      sanitize_index
      sanitize_taxon_name