capellini.utils.network\_utils
==============================

.. automodule:: capellini.utils.network_utils

   
   .. rubric:: Functions

   .. autosummary::
   
      aggregate_otu_columns_by_rank_skip_nan
      align_abundance_from_metadata
      assign_crispr
      build_binary_crispr_matrix
      build_smoothed_crispr_for_study
      build_taxonomy_kernel_from_shared_ranks
      build_xstar_from_smoothed_crispr
      build_xstar_from_smoothed_crispr_residual
      crispr_matrix_aggregate_viruses
      get_hierarchies
      orient_W_viruses_by_bacteria
      out_path
      prepare_bacteria_genus_abundance
      prevalence_filter_df
      remove_disease_columns_from_virus_abundance
      residual_message_passing
      residual_message_passing_df
      smooth_crispr_bac_vir
      study_outdir
      summarize_df
      transform_message_passing_smoothed_crispr
      transform_message_passing_smoothed_crispr_df