capellini.stages.mmseqs2
========================

.. automodule:: capellini.stages.mmseqs2

   
   .. rubric:: Functions

   .. autosummary::
   
      build_top200_dicts
      extract_ids_from_header
      extract_ids_from_reference
      fallback_pick_from_space
      get_reference_16s
      is_16s_gene
      map_silva_to_progenomes_bounded
      parse_mmseqs_output
      pick_bounded
      run_mmseqs2
      run_mmseqs_easy_search