CAPELLINI

CRISPR-Abundance Phage-Evidence Linkage for Leveraging Interaction Network Inference

CAPELLINI is an integrative method for inferring phage–host interactions from paired 16S rRNA amplicon and viral metagenomics data. It combines dataset-specific CRISPR evidence with abundance-based statistical network inference.

User guide

• Installation
  • External dependencies
  • Reference FASTAs
• Quick start
  • Terminal UI
  • Programmatic API
• Pipeline overview
  • Stages
• Configuration
  • Key parameters
  • Inputs
  • Outputs

Reference

• API reference
  • Top-level
  • Stages
  • Utilities

About

• Citation

Indices

• Index

• Module Index

• Search Page